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1

Best practices for analysing microbiomes

Knight, Rob, Vrbanac, Alison, Taylor, Bryn C., Aksenov, Alexander, Callewaert, Chris, Debelius, Justine, Gonzalez, Antonio, Kosciolek, Tomasz, McCall, Laura-Isobel, McDonald, Daniel, Melnik, Alexey V.

Journal:

Nature Reviews Microbiology

Year:

2018

Language:

english

File:

PDF, 3.11 MB

english, 2018

2

Methods for phylogenetic analysis of microbiome data

Washburne, Alex D., Morton, James T., Sanders, Jon, McDonald, Daniel, Zhu, Qiyun, Oliverio, Angela M., Knight, Rob

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

3

The Microbiome and Human Biology

Knight, Rob, Callewaert, Chris, Marotz, Clarisse, Hyde, Embriette R., Debelius, Justine W., McDonald, Daniel, Sogin, Mitchell L.

Journal:

Annual Review of Genomics and Human Genetics

Year:

2017

Language:

english

File:

PDF, 635 KB

english, 2017

4

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Langille, Morgan G I, Zaneveld, Jesse, Caporaso, J Gregory, McDonald, Daniel, Knights, Dan, Reyes, Joshua A, Clemente, Jose C, Burkepile, Deron E, Vega Thurber, Rebecca L, Knight, Rob, Beiko, Robert G

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

5

Benchmarking and Assessment of Good Practices in Public Transport Information Systems

Yatskiv, Irina, Kopytov, Eugene, Casellato, Domenico, Luppino, Giuseppe, McDonald, Rob

Journal:

Transport and Telecommunication

Year:

2013

Language:

english

File:

PDF, 864 KB

english, 2013

6

[American Institute of Aeronautics and Astronautics 9th AIAA Aviation Technology, Integration, and Operations Conference (ATIO) - Hilton Head, South Carolina ()] 9th AIAA Aviation Technology, Integration, and Operations Conference (ATIO) - Multidisciplinary Design Optimization of an Extreme Aspect Ratio HALE UAV

Morrisey, Bryan, McDonald, Rob

Year:

2009

Language:

english

File:

PDF, 308 KB

english, 2009

7

Rethinking “Enterotypes”

Knights, Dan, Ward, Tonya L., McKinlay, Christopher E., Miller, Hannah, Gonzalez, Antonio, McDonald, Daniel, Knight, Rob

Journal:

Cell Host & Microbe

Year:

2014

Language:

english

File:

PDF, 1.42 MB

english, 2014

8

The pre-transport management of antemortem stress in cattle: Impact on carcass yield

Schaefer, Al, Grumpelt, Bernie, Hofer, Wil, Currie, Orvil, Jones, Owen, Jones, Krisjan, Kimmel, Darrell, McDonald, Bob, Patterson, Rob

Journal:

Canadian Journal of Animal Science

Year:

2015

Language:

english

File:

PDF, 90 KB

english, 2015

9

[American Institute of Aeronautics and Astronautics 13th International Conference on Space Operations 2014 - Pasadena, CA ()] 13th International Conference on Space Operations 2014 - Curing XMM-Newton’s reaction wheel cage instability: the in-flight re-lubrication experience

Pantaleoni, Mauro, Chapman, Patrick, Harris, Rob, Kirsch, Marcus G., Kresken, Rainer, Martin, Jim, McMahon, Paul, Mcdonald, Alastair, Schmidt, Frederic, Strandberg, Tommy, Webert, Detlef, Weissmann, U

Year:

2014

Language:

english

File:

PDF, 1.02 MB

english, 2014

10

Exploring the relationship between cognition and functional verbal reasoning in adults with severe traumatic brain injury at six months post injury

Avramović, Petra, Kenny, Belinda, Power, Emma, McDonald, Skye, Tate, Robyn, Hunt, Louise, MacDonald, Sheila, Heard, Rob, Togher, Leanne

Journal:

Year:

2017

Language:

english

File:

PDF, 1.47 MB

english, 2017

11

Role of the microbiome, probiotics, and ‘dysbiosis therapy’ in critical illness

Wischmeyer, Paul E., McDonald, Daniel, Knight, Rob

Journal:

Current Opinion in Critical Care

Year:

2016

Language:

english

File:

PDF, 3.79 MB

english, 2016

12

Amphiphilically Nanostructured Deep Eutectic Solvents

McDonald, Samila, Murphy, Thomas, Imberti, Silvia, Warr, Gregory G., Atkin, Rob

Journal:

The Journal of Physical Chemistry Letters

Year:

2018

Language:

english

File:

PDF, 5.89 MB

english, 2018

13

SAE Technical Paper Series [SAE International SAE 2015 AeroTech Congress & Exhibition - (SEP. 22, 2015)] SAE Technical Paper Series - Fully Automated Robotic Tool Change

Rediger, Jason, Fitzpatrick, Kyle, McDonald, Rob, Uebele, Daniel

Year:

2015

Language:

english

File:

PDF, 3.93 MB

english, 2015

14

Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects

Nguyen, Tanya T., Kosciolek, Tomasz, Maldonado, Yadira, Daly, Rebecca E., Martin, Averria Sirkin, McDonald, Daniel, Knight, Rob, Jeste, Dilip V.

Journal:

Schizophrenia Research

Year:

2018

Language:

english

File:

PDF, 625 KB

english, 2018

15

Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients

McDonald, Daniel, Hornig, Mady, Lozupone, Catherine, Debelius, Justine, Gilbert, Jack A., Knight, Rob

Journal:

Microbial Ecology in Health & Disease

Year:

2015

Language:

english

File:

PDF, 610 KB

english, 2015

16

Cognitive-communication and psychosocial functioning 12 months after severe traumatic brain injury

Tran, Sarah, Kenny, Belinda, Power, Emma, Tate, Robyn, McDonald, Skye, Heard, Rob, Togher, Leanne

Journal:

Year:

2018

Language:

english

File:

PDF, 1.67 MB

english, 2018

17

Effects of spinal immobilization and spinal motion restriction on head-neck kinematics during ambulance transport.

Thezard, Florent, McDonald, Neil, Kriellaars, Dean, Giesbrecht, Gordon, Weldon, Erin, Pryce, Rob T

Journal:

Prehospital Emergency Care

Year:

2019

Language:

english

File:

PDF, 795 KB

english, 2019

18

Acupuncture in Adult and Pediatric Headache: A Narrative Review

Doll, Elizabeth, Threlkeld, Brooke, Graff, Danielle, Clemons, Rob, Mittel, Olivia, Sowell, Michael K., McDonald, Mark

Journal:

Neuropediatrics

Year:

2019

Language:

english

File:

PDF, 148 KB

english, 2019

19

EXTRA—A Multicenter Phase II Study of Chemoradiation Using a 5 Day per Week Oral Regimen of Capecitabine and Intravenous Mitomycin C in Anal Cancer

Rob Glynne-Jones, Helen Meadows, Susan Wan, Simon Gollins, Martin Leslie, Ed Levine, Alec C. McDonald, Sun Myint, Les Samuel, David Sebag-Montefiore

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2008

Language:

english

File:

PDF, 386 KB

english, 2008

20

Public participation in plastics recycling schemes

Seonaidh McDonald, Rob Ball

Journal:

Resources, Conservation and Recycling

Year:

1998

Language:

english

File:

PDF, 691 KB

english, 1998

21

A bedside assay to detect streptococcus pneumoniae in children with empyema

Roxanne E. Strachan, Anita Cornelius, Gwendolyn L. Gilbert, Tanya Gulliver, Andrew Martin, Tim McDonald, Gillian M. Nixon, Rob Roseby, Sarath Ranganathan, Hiran Selvadurai, Greg Smith, Manuel Soto-Mar

Journal:

Pediatric Pulmonology

Year:

2011

Language:

english

File:

PDF, 66 KB

english, 2011

22

Corrigendum to “Identified a morpholinyl-4-piperidinylacetic acid derivatives as a potent oral active VLA-4 antagonist”: [Bioorg. Med. Chem. Lett. 15 (1) (2005) 41]

Jun Chiba, Nobuo Machinaga, Tohru Takashi, Akio Ejima, Gensuke Takayama, Mika Yokoyama, Atsushi Nakayama, John J. Baldwin, Edward McDonald, Kevin J. Moriarty, Christopher R. Sarko, Kurt W. Saionz, Rob

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2005

Language:

english

File:

PDF, 52 KB

english, 2005

23

Pleural fluid nucleic acid testing enhances pneumococcal surveillance in children

ROXANNE. E. STRACHAN, ANITA CORNELIUS, GWENDOLYN. L. GILBERT, TANYA GULLIVER, ANDREW MARTIN, TIM MCDONALD, GILLIAN NIXON, ROB ROSEBY, SARATH RANGANATHAN, HIRAN SELVADURAI, GREG SMITH, MANUEL SOTO-MART

Journal:

Year:

2012

Language:

english

File:

PDF, 219 KB

english, 2012

24

Absence of effects of predator control on nesting success of Northern Lapwings Vanellus vanellus: implications for conservation

THOMAS W. BODEY, ROBBIE A. MCDONALD, ROB D. SHELDON, STUART BEARHOP

Journal:

Year:

2011

Language:

english

File:

PDF, 325 KB

english, 2011

25

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

Kuczynski, Justin, Liu, Zongzhi, Lozupone, Catherine, McDonald, Daniel, Fierer, Noah, Knight, Rob

Journal:

Year:

2010

Language:

english

File:

PDF, 1.01 MB

english, 2010

26

Christchurch earthquake disaster. The lived experience AUSMAT deployment February 2011

Journal:

Australasian Emergency Nursing Journal

Year:

2011

Language:

english

File:

PDF, 51 KB

english, 2011

27

Comparison of methods for estimating the nucleotide substitution matrix

Maribeth Oscamou, Daniel McDonald, Von Bing Yap, Gavin A Huttley, Manuel E Lladser, Rob Knight

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 415 KB

english, 2008

28

Nicotine interacts with sex in affecting rat choice between “look-out” and “navigational” cognitive styles in the Morris water maze place learning task

Lütfiye Kanit, Dilek Taşkıran, John J Furedy, Berrin Kulali, Rob McDonald, Şakire Pöğün

Journal:

Brain Research Bulletin

Year:

1998

Language:

english

File:

PDF, 159 KB

english, 1998

29

“Mind the Gap”—The Impact of Variations in the Duration of the Treatment Gap and Overall Treatment Time in the First UK Anal Cancer Trial (ACT I)

Rob Glynne-Jones, David Sebag-Montefiore, Richard Adams, Alec McDonald, Simon Gollins, Roger James, John M.A. Northover, Helen M. Meadows, Mark Jitlal

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2011

Language:

english

File:

PDF, 213 KB

english, 2011

30

Imaging atherosclerosis with hybrid [18F]fluorodeoxyglucose positron emission tomography/computed tomography imaging: What Leonardo da Vinci could not see

Myra S. Cocker PhD, Brian Mc Ardle MB BCh, J. David Spence MD, Cheemun Lum MD, Robert R. Hammond MD, Deidre C. Ongaro B.Sc, Matthew A. McDonald B.Sc, Robert A. deKemp PhD, Jean-Claude Tardif MD, Rob S

Journal:

Journal of Nuclear Cardiology

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

31

Activating and inhibiting connections in biological network dynamics

Daniel McDonald, Laura Waterbury, Rob Knight, M D Betterton

Journal:

Year:

2008

Language:

english

File:

PDF, 1.05 MB

english, 2008

32

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

Daniel McDonald, Jose C Clemente, Justin Kuczynski, Jai Ram Rideout, Jesse Stombaugh, Doug Wendel, Andreas Wilke, Susan Huse, John Hufnagle, Folker Meyer, Rob Knight, J Gregory Caporaso

Journal:

Year:

2012

Language:

english

File:

PDF, 218 KB

english, 2012

33

PLUMAGE DEVELOPMENT AND MOLT IN LONG-TAILED MANAKINS (CHIROXIPHIA LINEARIS): VARIATION ACCORDING TO SEX AND AGE

Doucet, Stéphanie M., McDonald, David B., Foster, Mercedes S., Clay, Rob P.

Journal:

Year:

2007

Language:

english

File:

PDF, 357 KB

english, 2007

34

THE IMPACT OF RURALURBAN MIGRATION ON UNDER-TWO MORTALITY IN INDIA

STEPHENSON, ROB, MATTHEWS, ZOE, MCDONALD, J. W.

Journal:

Journal of Biosocial Science

Year:

2003

Language:

english

File:

PDF, 501 KB

english, 2003

35

[American Institute of Aeronautics and Astronautics 38th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit - Indianapolis, Indiana (07 July 2002 - 10 July 2002)] 38th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit - A Method for Thermodynamic Work Potential Analysis of Aircraft Engines

Roth, Bryce, McDonald, Rob, Mavris, Dimitri

Year:

2002

Language:

english

File:

PDF, 581 KB

english, 2002

36

[American Institute of Aeronautics and Astronautics 47th AIAA Aerospace Sciences Meeting including The New Horizons Forum and Aerospace Exposition - Orlando, Florida ()] 47th AIAA Aerospace Sciences Meeting including The New Horizons Forum and Aerospace Exposition - Senior Design at Cal Poly: A Recipe for Success

McDonald, Rob, Puig-Suari, Jordi, Esposto, Dave, Wright, Bruce

Year:

2009

Language:

english

File:

PDF, 11.27 MB

english, 2009

37

[American Institute of Aeronautics and Astronautics 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition - Orlando, Florida ()] 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition - Conceptual Design of a Next Generation, 150 Passenger Commercial Transport

Halper, Ryan, Lane, Kevin, Marschik, Dustin, Morham, Brett, Pham, John, McDonald, Rob, Wright, Bruce

Year:

2010

Language:

english

File:

PDF, 3.97 MB

english, 2010

38

[American Institute of Aeronautics and Astronautics 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition - Orlando, Florida ()] 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition - Lift Superposition and Aerodynamic Twist Optimization for Achieving Desired Lift Distributions

Lane, Kevin, Marshall, David, McDonald, Rob

Year:

2010

Language:

english

File:

PDF, 602 KB

english, 2010

39

[American Institute of Aeronautics and Astronautics 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition - Orlando, Florida ()] 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition - Improved Geometry Modeling for High Fidelity Parametric Design

Gloudemans, James, McDonald, Rob

Year:

2010

Language:

english

File:

PDF, 1.89 MB

english, 2010

40

Improving medication adherence in chronic obstructive pulmonary disease: a systematic review

Bryant, Jamie, McDonald, Vanessa M, Boyes, Allison, Sanson-Fisher, Rob, Paul, Christine, Melville, Jessica

Journal:

Respiratory Research

Year:

2013

Language:

english

File:

PDF, 230 KB

english, 2013

41

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

McDonald, Daniel, Price, Morgan N, Goodrich, Julia, Nawrocki, Eric P, DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob, Hugenholtz, Philip

Journal:

The ISME Journal

Year:

2012

Language:

english

File:

PDF, 402 KB

english, 2012

42

Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings

Ursell, Luke K., Gunawardana, Manjula, Chang, Simon, Mullen, Madeline, Moss, John A., Herold, Betsy C., Keller, Marla J., McDonald, Daniel, González, Antonio, Knight, Rob, Baum, Marc M.

Journal:

Antiviral Research

Year:

2014

Language:

english

File:

PDF, 839 KB

english, 2014

43

Plumage Development and Molt in Long-Tailed Manakins (Chiroxiphia linearis): Variation According to Sex and Age (Desarrollo del Plumaje y Muda en Chiroxiphia linearis: Variación de Acuerdo al Sexo y la Edad)

Stéphanie M. Doucet, David B. McDonald, Mercedes S. Foster, Rob P. Clay and D. B. Lank

Journal:

Year:

2007

Language:

english

File:

PDF, 2.75 MB

english, 2007

44

[IEEE 2011 International Conference on Remote Sensing, Environment and Transportation Engineering (RSETE) - Nanjing, China (2011.06.24-2011.06.26)] 2011 International Conference on Remote Sensing, Environment and Transportation Engineering - Development and evaluation of a route guidance system with realtime traffic information

Zheng, Pengjun, McDonald, Rob, McDonald, Mike

Year:

2011

Language:

english

File:

PDF, 335 KB

english, 2011

45

Human Immunodeficiency Virus nef Signature Sequences Are Associated with Pulmonary Hypertension

Almodovar, Sharilyn, Knight, Rob, Allshouse, Amanda A., Roemer, Sarah, Lozupone, Catherine, McDonald, Daniel, Widmann, Jeremy, Voelkel, Norbert F., Shelton, Robert J., Suarez, Edu B., Hammer, Kenneth

Journal:

AIDS Research and Human Retroviruses

Year:

2012

Language:

english

File:

PDF, 1.11 MB

english, 2012

46

Slowed muscle oxygen uptake kinetics with raised metabolism are not dependent on blood flow or recruitment dynamics

Wüst, Rob C. I., McDonald, James R., Sun, Yi, Ferguson, Brian S., Rogatzki, Matthew J., Spires, Jessica, Kowalchuk, John M., Gladden, L. Bruce, Rossiter, Harry B.

Journal:

The Journal of Physiology

Year:

2014

Language:

english

File:

PDF, 490 KB

english, 2014

47

[IEEE ICASSP 2008 - 2008 IEEE International Conference on Acoustics, Speech and Signal Processing - Las Vegas, NV, USA (2008.03.31-2008.04.4)] 2008 IEEE International Conference on Acoustics, Speech and Signal Processing - On the prediction of speech quality ratings of tracheoesophageal speech using an auditory model

McDonald, Rob, Parsa, Vijay, Doyle, Philip, Guo Chen,

Year:

2008

Language:

english

File:

PDF, 242 KB

english, 2008

48

[IEEE 2008 Canadian Conference on Electrical and Computer Engineering - CCECE - Niagara Falls, ON, Canada (2008.05.4-2008.05.7)] 2008 Canadian Conference on Electrical and Computer Engineering - Prediction of the quality ratings of tracheoespohageal speech using adaptive time-frequency representations

McDonald, Rob, Parsa, Vijay, Doyle, Phillip

Year:

2008

Language:

english

File:

PDF, 151 KB

english, 2008

49

[IEEE 2010 International Conference on Multimedia Technology (ICMT) - Ningbo, China (2010.10.29-2010.10.31)] 2010 International Conference on Multimedia Technology - UTMC Communication over WiMAX Network

Zheng, Pengjun, McDonald, Rob, McDonad, Mike

Year:

2010

Language:

english

File:

PDF, 227 KB

english, 2010

50

Collaborative cloud-enabled tools allow rapid, reproducible biological insights

Ragan-Kelley, Benjamin, Walters, William Anton, McDonald, Daniel, Riley, Justin, Granger, Brian E, Gonzalez, Antonio, Knight, Rob, Perez, Fernando, Caporaso, J Gregory

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 280 KB

english, 2013

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